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Publications

Dendron-modified surfaces provide an ideal environment for stem-loop DNA probes.

J Boateng, J Peek, R Zahorchak, K Chittur.
Anal Biochem. 2012 Nov1;430(1):39-44. [Epub ahead of print]

Thyroid hydrogen peroxide production is enhanced by the Th2 cytokines, IL-4 and IL-13, through increased expression of the Dual Oxidase 2 and its maturation factor DUOXA2.

H Raad, Z Eskalli, B Corvilain, F Miot, XD Deken.
Free Radic Biol Med. 2012 Sep 22. pii: S0891-5849(12)01126-4. [Epub ahead of print]

Estrogen receptor β induces antiinflammatory and antitumorigenic networks in colon cancer cells.

K Edvardsson, A Ström, P Jonsson, JÅ Gustafsson, C Williams.
Mol Endocrinol. 2011 Jun;25(6):969-79

A potent plant-derived antifungal acetylenic acid mediates its activity by interfering with fatty acid homeostasis.

T Xu, SK Tripathi, Q Feng, MC Lorenz, MA Wright, MR Jacob, MM Mask, SR Baerson, X-C Li, AM Clark, AK Agarwal.
Antimicrob Agents Chemother. 2012 Jun;56(6):2894-907.

Intracellular Streptococcus pyogenes in human macrophages display an altered gene expression profile.

E Hertzén, L Johansson, R Kansal, A Hecht, S Dahesh, et al.
PLoS ONE. 2012 Apr;7(4):e35218.

Methylation of death-associated protein kinase is associated with cetuximab and erlotinib resistance

T Ogawa, TE Liggett, AA Melnikov, CL Monitto, D Kusuke, K Shiga, T Kobayashi, A Horil, A Chatterjee, VV Levenson, WM Koch, D Sidransky, X Chang.
Cell Cycle. 2012 Apr15;11(8):1656-63.

Peripheral blood gene expression profiles in metabolic syndrome, coronary artery disease and type 2 diabetes.

BL Grayson, L Wang, TM Aune.
Genes Immun 2011 Jul;12(5):341–51.

Toward a microRNA signature of endometrial cancer.

EJ Devor, MJ Goodheart, KK Leslie.
Proc Obster Gynecol 2011 Jul;2(1):2.

Knockdown of SF-1 and RNF31 affects components of steroidogenesis, TGFβ, and Wnt/β-catenin signaling in adrenocortical carcinoma cells.

A Ehrlund, P Jonsson, L-L Vedin, C Williams, J-Å Gustafsson, et al.
PLoS ONE. 2012 Mar;7(3):e32080.

Identification of Wnt/β-catenin modulated genes in the developing retina.

A Ha, C Perez-Iratxeta, H Liu, AJ Mears, VA Wallace.
Mol Vis. 2012 Mar;18:645-56.

Alteration of gene expression profile in Niemann-Pick Type C mice correlates with tissue damage and oxidative stress.

MC Vázquez, T del Pozo, FA Robledo, G Carrasco, L Pavez, F Olivares, M González, S Zanlungo.
PLoS One. 2011 Dec;6(12):e28777.

Vitamin D deficiency-induced hypertension is associated with vascular oxidative stress and altered heart gene expression.

JF Argacha, D Egrise, S Pochet, D Fontaine, A Lefort, F Libert, S Goldman, P van de Borne, G Berkenboom, R Moreno Reyes.
J Cardiovasc Pharmacol. 2011 Jul;58(1):65-71.

The fungal pathogen Candida albicans autoinduces hyphal morphogenesis by raising extracellular pH.

S Vylkova, AJ Carman, HA Danhof, JR Collette, H Zhou, MC Lorenz.
mBio 2011 May 17; 2(3):e00055-11.

Transcriptional response of Mycoplasma genitalium to osmotic stress.

W Zhang, JB Baseman.
Microbiology. 2011 Feb;157(Pt 2):548-56.

Placental microRNA expression in pregnancies complicated by preeclampsia.

DA Enquobahrie, DF Abetew, TK Sorensen, D Willoughby, K Chidambaram, MA Williams.
Am J Obstet Gynecol. 2011 Feb;204(2):178.e12-21.

Distinctive DNA methylation patterns of cell-free plasma DNA in women with malignant ovarian tumors.

TE Liggett, A Melnikov, Q Yi, C Replogle, W Hu, J Rotmensch, A Kamat, AK Sood, V Levensen.
Gynecol Oncol. 2011 Jan; 120(1):113-20.

Responses of human endothelial cells to pathogenic and non-pathogenic Leptospira species.

DG Martinez-Lopez, M Fahey, J Coburn.
PLoS Negl Trop Dis. 2010 Dec 14; 4(12):e918.

Altered gene expression profiles in the brain, kidney, and lung of deceased neonatal cloned pigs.

J Park, SL Marjani, L Lai, M Samuel, D Wax, SR Davis, RS Bruno, RS Prather, X Yang, XC Tian.
Cellular Reprogramming (Formerly "Cloning and Stem Cells"). October 2010, 12(5): 589-597.

PPARγ-induced cardiolipotoxicity in mice is ameliorated by PPARα deficiency despite increases in fatty acid oxidation.

Ni-Huiping Son, S Yu, J Tuinei, K Arai, H Hamai, S Homma, GI Shulman, ED Abel, and IJ Goldberg.
J Clin Invest. 2010 October 1; 120(10): 3443–3454.

Microarray analysis of gene expression by skeletal muscle of three mouse models of Kennedy disease/spinal bulbar muscular atrophy.

K Mo, Z Razak, P Rao, Z Yu, H Adachi, M Katsuno.
PLoS One. 2010 Sep 23;5(9):e12922.

Transcriptome of swarming Proteus mirabilis.

MM Pearson, DA Rasko, SN Smith, HL Mobley.
Infect Immun. 2010 Jun;78(6):2834-45.

Differential methylation of cell‐free circulating DNA among patients with pancreatic cancer versus chronic pancreatitis.

T Liggett, A Melnikov, Q Yi, C Replogle, R Brand.
Cancer, 2010 April1;116(7):1674–1680.

Methylation patterns of cell-free plasma DNA in relapsing-remitting multiple sclerosis.

T Liggett, A Melnikov, S Tilwalli, Q Yi, H Chen, C Replole, X Feng, A Reder, D Stefoski, R Balabanov, V Levenson.
J Neurol Sci. 2010 Mar 15;290(1-2):16-21.

Identification of a modular pathogenicity island that is widespread among urease-producing uropathogens and shares features with a diverse group of mobile elements.

EL Flannery, L Mody, HLT Mobley.
Infect Immun. 2009 November;77(11):4887–4894.

Trypanosoma cruzi targets Akt in host cells as an intracellular antiapoptotic strategy.

MV Chuenkova, M PereiraPerrin.
Sci Signal. 2009 November 17;2(97): ra74.

Pressure-mediated hypertrophy and mechanical stretch induces IL-1 release and subsequent IGF-1 generation to maintain compensative hypertrophy by affecting Akt and JNK pathways.

S Honsho, S Nishikawa, K Amano, K Zen, Y Adachi, E Kishita, A Matsui, A Katsume, S Yamaguchi, K Nishikawa, K Isoda, DWH Riches, S Matoba, M Okigaki, H Matsubara.
Circ Res. 2009 Nov 20;105(11):1149-58.

Regulation of expression of the Haemophilus ducreyi LspB and LspA2 proteins by CpxR.

M Labandeira-Rey, JR Mock, EJ Hansen.
Infect Immun. 2009 Aug; 77(8):3402-11.

Gene expression profile of rat ovarian tissue following xenotransplantation into immune-deficient mice.

C Agca, MC Lucy, Y Agca.
Reproduction, 2009 Jun;137(6):957-67.

Expression profile of mammalian microRNAs in endometrioid adenocarcinoma

W Wu, Z Lin, Z Zhuang, X Liang.
European Journal of Cancer Prevention, 2009 February;18(1):50-55.

Gene and protein expression profiling of the fat-1 mouse brain.

D Ménesi, K Kitajka, E Molnár, Z Kis, J Belleger, M Narce, JX Kang, LG Puskas, UN Das.
Prostaglandins Leukot Essent Fatty Acids, 2009 Jan;80(1):33-42.

Gene expression patterns in glucose-stimulated podocytes.

SH Han, S Yang, DS Jung, JJ Li, JJ Kim, SJ Kwak, DK Kim, SJ Moon, JE Lee, D-S Han, S-W Kang.
Biochemical and Biophysical Research Communications, 2008 June6;370(3):514-518.

Transcriptional interplay among the regulators Rrp2, RpoN and RpoS in Borrelia burgdorferi.

Z Ouyang, JS Blevins, MV Norgard.
Microbiology, 2008 Sep;154(Pt 9):2641-58.

Essential role of the response regulator Rrp2 in the infectious cycle of Borrelia burgdorferi

BK Boardman, M He, Z Ouyang, H Xu, X Pang, XF Yang.
Infect Immun, 2008 Sep;76(9):3844-53.

Utilization of microarray technology for functional genomics in ictalurid catfish.

Z Liu, RW Li, GC Waldbieser.
J Fish Biol. 2008 Jun;72(9):1639-48.

Genomic analysis reveals Mycoplasma pneumoniae repetitive element 1-mediated recombination in a clinical isolate.

O Musatovova, TR Kannan, JB Baseman.
Infect Immun, 2008 Apr;76(4):1639-48.

Role of heme in the antifungal activity of the azaoxoaporphine alkaloid sampangine.

AK Agarwal, T Xu, MR Jacob, Q Feng, MC Lorenz, LA Walker, AM Clark.
Eukaryot Cell, 2008 Feb; 7(2):387-400.

Array-based multiplex analysis of DNA methylation in breast cancer tissues.

AA Melnikov, DM Scholtens, EL Wile, SA Khan, VV Levenson.
J Mol Diagn, 2008 Jan;10(1):93-101.

Metabolic analysis of Moraxella catarrhalis and the effect of selected in vitro growth conditions on global gene expression.

W Wang, L Reitzer, DA Rasko, MM Pearson, RJ Blick, C Laurence, EJ Hansen.
Infect Immun, 2007 Oct;75(10):4959-71.

The nonhomologous end joining factor Artemis suppresses multi-tissue tumor formation and prevents loss of heterozygosity.

Y Woo, SM Wright, SA Maas, TL Alley, LB Caddle, S Kamdar, J Affourtit, O Foreman1, E C Akeson, D Shaffer, R T Bronson, HC Morse III, D Roopenian and KD Mills.
Oncogene. 2007 Sep 6;26(41):6010-20.

Temporal analysis of Candida albicans gene expression during biofilm development.

KM Yeater, J Chandra, G Cheng, PK Mukherjee, X Zhao, SL Rodriguez-Zas, KE Kwast, MA Ghannoum, LL Hoyer.
Microbiology. 2007 Aug;153(Pt 8):2373-85.

MicroRNA expression profiling during human cord blood-derived CD34 cell erythropoiesis.

ML Choong, HH Yang, I McNiece.
Exp Hematol. 2007 Apr;35(4):551-64.

Lithium treatment prevents neurocognitive deficit resulting from cranial irradiation.

EM Yazlovitskaya, E Edwards, D Thotala, A Fu, KL Osusky, WO Whetsell Jr, B Boone, ET Shinohara, DE Hallahan.
Cancer Res. 2006 Dec1;66(23):11179-86.

Sigma X induces competence gene expression in Streptococcus pyogenes.

RL Woodbury, X Wang, CP Moran Jr.
Res Microb, 2006 November;157(9):851-856.

Metabolic-state-dependent remodeling of the transcriptome in response to anoxia and subsequent reoxygenation in Saccharomyces cerevisiae.

LC Lai,1 AL Kosorukoff, PV Burke, KE Kwast.
Eukaryot Cell, 2006 Sep;5(9):1468-89.

Two dual specificity kinases are preferentially induced by wild-type rather than by oncogenic RAS P-21 in Xenopus oocytes.

Y Qu, V Adler, T Chu, O Platica, J Michl, S Pestka, L Izotova, M Boutjdir, MR Pincus.
Frontiers Biosci, 2006 September1;11:2420-2427.

Identification of Francisella tularensis genes affected by iron limitation.

K Deng, RJ Blick, W Liu, EJ Hansen.
Infection and Immunity, 2006 July;74(7):4224-4236.

RscA, a member of the MDR1 family of transporters, is repressed by CovR and required for growth of Streptococcus pyogenes under heat stress.

TL Dalton, JT Collins, TC Barnett, JR Scott.
J Bacteriol. 2006 Jan;188(1):77-85.

Global gene expression analyses of mouse fibroblast L929 cells exposed to IC50 MMA by DNA microarray and confirmation of four detoxification genes' expression by Real-time PCR.

A Ishikawa, S Jinno, T Suzuki, T Hayashi, T Kawai, T Mizuno, T Mori, M Hattori
Dental Materials J 2006;25(2):205-213.

Unique aspects of gene expression during Candida albicans mating and possible G1 dependency.

R Zhao, KJ Daniels, SR Lockhart, KM Yeater, LL Hoyer, DR Soll.
Eukaryot Cell. 2005 July;4(7):1175–1190.

Analysis of the Candida albicans Als2p and Als4p adhesins suggests the potential for compensatory function within the Als family.

X. Zhao, S.-H. Oh, K. M. Yeater, and L. L. Hoyer.
Microbiology. 2005 May;151(Pt 5):1619–1630.

Dynamical remodeling of the transcriptome during short-term anaerobiosis in Saccharomyces cerevisiae: Differential response and role of Msn2 and/or Msn4 and other factors in galactose and glucose media.

LC Lai, AL Kosorukoff, PV Burke, KE Kwast.
Mol Cell Biol. 2005 May;25(10):4075–4091.

Chaotic mixer improves microarray hybridization.

MK McQuain, K Seale, J Peek, TS Fisher, S Levy, MA Stremler, FR Haselton.
Anal Biochem. 2004 Feb15;325(2):215-26.

Effects of relative humidity and buffer additives on the contact printing of microarrays by quill pins.

MK McQuain, K Seale, J Peek, S Levy, FR Haselton.
Anal Biochem. 2003 Sep 15;320(2):281-91.